timon
Bachelor Student

Timon Jasarevic

BSc student working on simulating critical fluids using Machine Learned Potentials with Youri Ran and Dr. David Dubbeldam

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Master Student

Raven Polhuis

Master student in chemistry working with Jocelyne Vreede and Peter Bolhuis on the mechanistic aspects of the Watson-Crick-Franklin to Hoogsteen transition in DNA.

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mette
Bachelor Student

Mette Lijmer

BSc AI student working on Bayesian approaches to free-energy calculation with Eline Kempkes and Dr. Alberto Perez

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Bachelor Student

Jos Müller

HBO chemistry student from Hogeschool Leiden working with Jocelyne Vreede on the effect of DNA methylation on the binding of the YinYang1 transcription factor with

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Master Student

Michael Lekkerkerker

MSc student in Biomedical Sciences working with Jocelyne Vreede and Remco Kort on the dynamics of the enzyme glucosyl transferase.

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Bachelor Student

Marijne Buhrman

Bachelor student in biology and mathematics working with Jocelyne Vreede on the effect of methylation on gene expression using steered molecular dynamics and mathematical models.

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Master Student

Dermalice Kelly

MSc student in chemistry working with Jocelyne Vreede on the interaction of MADS transcription factors with DNA using molecular dynamics and steered molecular dynamics.

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Guest

Magdalena Häupl

Erasmus+ exchange master student from the University of Vienna working in the group of Prof. P. Bolhuis on investigating the homogenous nucleation of clathrate hydrates

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Master Student

Yarnick Zoetekouw

MSc student with Ioana Illie and Lars van Der Heide working on design and validation of Bax inhibiting peptides.

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Farah
Master Student

Syeda Farah Zainab

Farah is a MS student in the group of Ioana Ellie and works on understanding the role of post translational modifications in cancer metastasis

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chalupskyp
Master Student

Petr Chalupsky

MS student working on peptide design agains Patkinson’s disease in the group of Dr. Ioana Ilie

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Adrian
Master Student

Adrian Ruesink

MSc student working on inverse design of mechanical properties with glasses in the groups of Dr. Edan Lerner and Dr. Alberto Pérez de Alba Ortíz

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eline
Master Student

Eline van de Lagemaat

MSc student working on simulations of Fe at Earth’s inner core conditions with machine learning potentials in the group of Dr. Alberto Pérez de Alba

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PhD Student

Leontii Shtokolenko

Leontti is a PhD student working on the modeling of polymer films using random graphs, molecular simulations and machine learning

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Melanie
Master Student

Melanie Messih

Melanie is a MSc student in the group of Dr. J. Vreede, working on predicting protein-protein interactions with MD and SMD simulations in the following

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PhD Student

Jari Hoffmann

Working on predicting nanoplastic impact on protein function in the group of Dr. Alberto Pérez de Alba Ortíz.

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holly
Master Student

Holly Masson

Holly is a MSc student in the group of Ioana Ilie and is working on unraveling the interaction mechanisms between inhibitory peptides and alpha-synuclein fibrils.

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roether
Master Student

Lisa M. Roether

MSc Erasmus internship student working on computational prediction of mechanical responses of natural polyelectrolytes with Eline Kempkes and Dr. Alberto Pérez de Alba Ortíz

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mike meulendijks
Master Student

Mike Meulendijks

Mike is a MSc student in the group of Dr. J. Vreede, working on epigenetic gene regulation by investigating the effects of methylation of histone

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magda karavageli
Master Student

Magda Karavangeli

Working on the understanding of reaction coordinate of protein assembly in the group of Prof. Peter Bolhuis

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Eline Kempkes
PhD Student

Eline Kempkes

Working on design of molecules and soft materials in the group of Dr. Alberto Pérez de Alba Ortíz

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Post-Doc

Maxim Brodmerkel

AI4SMM postdoc working on Machine Learning-based models of plant protein mixtures for sustainable food design with Prof. Peter Bolhuis, Dr. Herke van Hoof, Dr. Sara

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Alexander
Post-Doc

Dr. Alexander Korotkevich

I work on screening and optimising solid salt hydrates for thermal energy storage using quantum chemistry and machine learning with Prof. Noushine Shahidzadeh (IoP Soft

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jacobus Dijkman
PhD Student

Jacobus Dijkman

PhD student in the group of dr. Bernd Ensing working on machine learning solutions for CO2 reduction catalysts.

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Longjiao
PhD Student

Longjiao Chen

PhD student in the groups of dr. J. Vreede in Computational Chemistry and prof. dr. Stanley Brul in Molecular Biology & Microbial Food Safety.

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Post-Doc

Bernadette Mohr

Post-doctoral researcher working on enhanced sampling of DNA-protein complexes in the group of Jocelyne Vreede.

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